If I have a time-stretched item it will click at the loop point even when the media starts/end at zero-crossings. If I destructively edit the file with start/end fades I still get clicks.
This happens with elastique 3, but not with elastique 2.
I've emailed a minimal project demonstrating the bug to support.
This could be a related issue:
Please also consider an option for short auto-fades at item loop points so we can loop media that doesn't end at perfect zero-crossings without needing to destructively edit to avoid clicks.