There's a real DSP in there. And it seems Alesis changed polarity to remedy complaints that the analog input was wired in reverse...
If you're adventurous, you could try running the Win 98SE software that controls the EQ and see if there's a polarity flip in there. That needs a serial cable between PC and monitor. Presumably a null-modem 9 pin D cable.
If you're even more adventurous, you could try load the same firmware on both.
Me, I'd just wire up a custom cable and be done with it. Or can you flip polarity on one side of the master in Reaper?
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