Furthermore, the script "Repair missing JSFX files in the current project" can help migrate existing projects.
Quote:
Originally Posted by Jeffsounds
Any way around having to deal with it every time I update?
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For now the only options are to either remove them or completely disable the feature (
Manage Repositories > Options > Prompt to uninstall obsolete packages).
In the next pre-release (almost ready) pinning the desired packages in the browser will suffice to mark them as still wanted.