I had a similar problem in a project and found that loading it with FX offline fixed the problem (it's an option in the open project window I believe).
Another option if you're willing to mess with files is to edit the .rpp project file itself to prevent it from automatically bringing up the problem plugin's GUI on load.
Open the .rpp with any editor and search for "<MASTERFXLIST" (for master track) and "<FXCHAIN" (for each track). Each will have an option just underneath called "SHOW", and you can set it to 0 for the offending tracks.
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