That's what I needed to know.
The target format that makes the most sense, since every video site you upload it to is going to transcode your video anyway is :
MKV container
H264 codec with a very high bitrate (10MBit+ with HD content)
16-bit PCM audio
That format works. It uploads to Youtube just fine and has for years. You should do a test upload to Vimeo.
Oh and btw, redownload your video from those video sites and check for sync. Youtube ALWAYS adds delay to the sound because of their encoder or something. It is then a good idea to shift the mix of your audio by the appropriate number of samples, for which Reaper is perfect yet again.
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