Any 3rd party plugins are installed like apps.
The easiest way to approach copying your installs and data is probably just to use the OSX migration tool. Start with a clean install on the Macbook Pro. When you get to the "would you like to transfer your stuff from an old Mac" option on the 2nd or 3rd screen in, select that. Plug the Air in in target disk mode (Power on and immediately hold down the 'T' key until it starts up. Then treat it like an external hard drive.) It should hold your hand through it.
You may need to authorize one or two paid plugins again depending on the copy protection.
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